Backing up using Fibre on SAN

Hi everyone....

Hopefully this is a fast question:

My media server is hooked up to the SAN, and so is my Windows file server.  If I want to backup using the Fibre connection, (and not the LAN), does the file server need to have the Media server installed, or can this be done with the Remote Agent?

If the answer is "The remote agent", I would like to know how to set this up.  I see no options in the Backup Exec menu to help me along....

Thanks!